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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48179506_48181118_R

Intron Information:

Intron Rank:
155342
Intron Class:
major
Intron Phase:
Intron Coordinates:
48179506 - 48181118
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
58.6
0.25
1.8
71.67
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023381
48179416 - 48188363
8948