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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48181231_48187603_R

Intron Information:

Intron Rank:
155343
Intron Class:
major
Intron Phase:
Intron Coordinates:
48181231 - 48187603
Intron Length:
6373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCGT
5'SS Class:
major
3'SS Sequence:
GGTATGTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TACACTATAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.2
43.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
70
0.45
1
61.3
44.6
Minor 5ss
42.1
-0.9
2.8
59.6
44.7
Minor BPS
52.4
-0
1.7
58.26
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031071
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023381
48179416 - 48188363
8948