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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4818675_4819283_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4818675 - 4819283
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTATACTTAAAC
Flanking Amino Acid:
LDIRCIRSLNGCRVTDEILH
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
84.9
0.79
0.8
79.3
32
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
69.7
0.6
1.6
78.2
36.5

Associated Gene:

Gene:
PAPOLG
Ensembl Gene ID:
ENSAPLG00000006813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007147
4818009 - 4823689
5681