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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4822718_4822800_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4822718 - 4822800
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGCTT
5'SS Class:
major
3'SS Sequence:
AATCTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
CTTCCAACAATA
Flanking Amino Acid:
GSYRLGVHTKGADIDALCVA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.7
44.4
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
77.3
0.61
0.9
70.5
35.2
Minor 5ss
34.6
-1.7
3.8
55.3
48.9
Minor BPS
44.7
-0.4
2
59.62
39.9

Associated Gene:

Gene:
PAPOLG
Ensembl Gene ID:
ENSAPLG00000006813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007147
4818009 - 4823689
5681