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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4822883_4823506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4822883 - 4823506
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATATTCTAAAGT
Flanking Amino Acid:
EWISELGESKNLPPSVVADV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75
0.56
0.8
68.4
32
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
55.3
0.24
2
74.5
42.4

Associated Gene:

Gene:
PAPOLG
Ensembl Gene ID:
ENSAPLG00000006813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007147
4818009 - 4823689
5681