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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4823574_4823642_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4823574 - 4823642
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCTTTACAG
Flanking Amino Acid:
VFEDEEELNHRLVVLGKLNN
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69
31.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.6
0.89
0.7
84
31
Minor 5ss
42.7
-0.8
3
55.5
48.7
Minor BPS
63.6
0.29
1.8
72.3
40.7

Associated Gene:

Gene:
PAPOLG
Ensembl Gene ID:
ENSAPLG00000006813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007147
4818009 - 4823689
5681