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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48236182_48249162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48236182 - 48249162
Intron Length:
12981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCCG
5'SS Class:
major
3'SS Sequence:
TCTTCTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTCTTCTATT
Flanking Amino Acid:
RRQGGRLLWEGNGPHHDRNC
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
57.9
46.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
81.3
0.7
0.8
74.2
35.2
Minor 5ss
36.6
-1.5
3.3
48.4
47.3
Minor BPS
54.7
0.23
1.9
75.66
41.6

Associated Gene:

Gene:
EPM2A
Ensembl Gene ID:
ENSAPLG00000027607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025714
48206992 - 48249834
42843