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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48275027_48276782_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
48275027 - 48276782
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TTTCTTCACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
CTTTTCTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
82.1
0.72
0.8
81.6
29.3
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
71.3
0.75
1.7
86.99
39.2

Associated Gene:

Gene:
FBXO30
Ensembl Gene ID:
ENSAPLG00000014234
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023567
48271848 - 48281751
9904