Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48318916_48319353_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48318916 - 48319353

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AATTCTACAAAC

Flanking Amino Acid:

MQTMLKTVDRRLVLQSVQEL

Intron Amino Acid Position:

1665

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

35.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.5

0.55

0.9

68.9

36.2

Minor 5ss

34.3

-1.8

3.4

50.5

Minor BPS

47.7

-0.2

1.8

61.04

37.4

Associated Gene:

Gene:

SHPRH

Ensembl Gene ID:

ENSAPLG00000014248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043825

48318738 - 48361428

42691

ENSAPLT00000040942

48318015 - 48361428

43414