Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48319435_48321944_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48319435 - 48321944

Intron Length:

2510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TGAACATGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTTTTGAACA

Flanking Amino Acid:

IGRVHRIGQTKSTIVHRFLI

Intron Amino Acid Position:

1638

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

81.8

29.7

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

63.1

0.3

1.1

58.8

Minor 5ss

38.1

-1.3

3.6

56.6

Minor BPS

74.5

0.77

1.3

83.67

29.9

Associated Gene:

Gene:

SHPRH

Ensembl Gene ID:

ENSAPLG00000014248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043825

48318738 - 48361428

42691

ENSAPLT00000040942

48318015 - 48361428

43414

ENSAPLT00000014869

48317981 - 48361428

43448