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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48322124_48322599_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48322124 - 48322599
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTTGCTGTGATT
Flanking Amino Acid:
SQINGISKFQENLSAFKYDP
Intron Amino Acid Position:
1579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84
0.77
0.7
82
30
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
48.6
-0
2.1
70.84
41.1

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448
ENSAPLT00000043825
48318738 - 48361428
42691