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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48332467_48333358_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48332467 - 48333358
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
QLLYLTNLEKSQDKTTGGVN
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.8
0.81
0.8
79.9
31.8
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448