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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48333461_48334146_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48333461 - 48334146
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGTAC
5'SS Class:
major
3'SS Sequence:
GCTGTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
PVLHIIEPHEVEQNRVKLLN
Intron Amino Acid Position:
1398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.5
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.4
0.46
0.9
64.8
36.5
Minor 5ss
30.9
-2.2
3.3
40.1
46.3
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448