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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48334291_48335553_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48334291 - 48335553
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTTCTTATAG
Flanking Amino Acid:
LFEAWKKEYKLLHEYWMVLR
Intron Amino Acid Position:
1350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.8
0.71
0.8
76.5
32.3
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
56.6
0.07
1.8
63.88
44.1

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448