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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48335780_48336783_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48335780 - 48336783
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGGCTTTATTT
Flanking Amino Acid:
TEYESKLFSQTVKGQMAIFE
Intron Amino Acid Position:
1274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.6
0.64
1
82.9
32.2
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
58.9
0.36
1.7
74.92
43

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448