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Intron Name: Anas_platyrhynchos_platyrhynchos_3_48337575_48339220_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48337575 - 48339220

Intron Length:

1646

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCAAATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

TTTTCTTCAAAT

Flanking Amino Acid:

QQTSKLSMAEKFRDCRGLQY

Intron Amino Acid Position:

1195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.1

29.5

Major BPS

78.2

0.7

79.9

32.6

Major PPT

72.1

0.5

72.1

36.9

Minor 5ss

31.5

-2.1

3.4

38.4

40.9

Minor BPS

71.8

0.76

1.6

89.71

34.2

Associated Gene:

Gene:

SHPRH

Ensembl Gene ID:

ENSAPLG00000014248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043825

48318738 - 48361428

42691

ENSAPLT00000040942

48318015 - 48361428

43414

ENSAPLT00000014869

48317981 - 48361428

43448