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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48339364_48340368_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48339364 - 48340368
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATAGATA
Flanking Amino Acid:
FQTIRELQRKIHSGSPWWLD
Intron Amino Acid Position:
1148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
87.9
22.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.9
0.65
0.9
73
36.5
Minor 5ss
25.3
-2.8
3.8
36.9
40.4
Minor BPS
51
0.02
2
68.16
38.2

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014869
48317981 - 48361428
43448
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414