About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48340477_48341567_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48340477 - 48341567
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTGTACATAATA
Flanking Amino Acid:
TLRDSRLAEEAEQLRQHYMS
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
75.8
0.58
0.9
69.7
35.5
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
59.9
0.31
1.8
73.42
38.4

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448