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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48341658_48343341_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48341658 - 48343341
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CTACCACTGACT
Flanking Amino Acid:
KEKLKTDSLQRLHSTHNLME
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
68.5
0.42
1
66.7
44.2
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
47.6
-0.1
2
67.95
42.3

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448