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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48343431_48344891_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48343431 - 48344891
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
NGLAGIHIIKEEYALAAELY
Intron Amino Acid Position:
1052

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.7
0.67
0.9
72
42
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448