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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48345014_48346902_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48345014 - 48346902
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
VRGEFLPLQKSTMTMEELLT
Intron Amino Acid Position:
1011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
81.5
0.71
0.8
73.2
35.8
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448