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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48347408_48348339_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48347408 - 48348339
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTCTGAAGT
Flanking Amino Acid:
SGTPVQRGLEDLYGLVLFLG
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.7
0.74
0.9
80.4
31.5
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
58.8
0.35
1.8
75.92
40.4

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448