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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48348419_48349192_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48348419 - 48349192
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTGGCATTGATT
Flanking Amino Acid:
AQMVECTTAKAAEMALRLSG
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
66.7
38.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
39.1
-1.2
3.2
56
48.1
Minor BPS
50.9
0.11
1.8
67.49
44.1

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448