Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48354152_48354805_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48354152 - 48354805

Intron Length:

654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GTTATACATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

TTGGTTATACAT

Flanking Amino Acid:

LKLKEKIQYPSLRVMVLAAV

Intron Amino Acid Position:

443

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

74.9

0.62

81.3

29.9

Major PPT

70.6

0.46

63.6

42.1

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

42.8

-0.4

1.9

60.84

43.4

Associated Gene:

Gene:

SHPRH

Ensembl Gene ID:

ENSAPLG00000014248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043825

48318738 - 48361428

42691

ENSAPLT00000040942

48318015 - 48361428

43414

ENSAPLT00000014869

48317981 - 48361428

43448