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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48355835_48356609_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48355835 - 48356609
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGATTTTCCACT
Flanking Amino Acid:
VKIYYNPFTGCIIREYPCAG
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.1
35.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
43.8
-0.7
3
58
42
Minor BPS
48.4
-0
1.9
69.21
41.8

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448