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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48356689_48357033_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48356689 - 48357033
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGACCT
Flanking Amino Acid:
RENFTGTPSNENALHFLWRE
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
85.5
30.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80
0.67
0.7
73.7
31.4
Minor 5ss
29.1
-2.4
3.8
39.2
40.5
Minor BPS
54.3
0.21
2
79.42
41.9

Associated Gene:

Gene:
SHPRH
Ensembl Gene ID:
ENSAPLG00000014248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043825
48318738 - 48361428
42691
ENSAPLT00000040942
48318015 - 48361428
43414
ENSAPLT00000014869
48317981 - 48361428
43448