Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48608670_48623439_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48608670 - 48623439

Intron Length:

14770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

CTGTAATGAATA

Flanking Amino Acid:

LVRLQLWDIAGQERFGNMTR

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

78.2

31.2

Major BPS

74.5

0.61

79.6

29.1

Major PPT

89.3

0.88

0.6

87.5

22.7

Minor 5ss

25.4

-2.8

3.5

36.8

47.7

Minor BPS

46.9

-0.2

1.9

58.4

41.2

Associated Gene:

Gene:

RAB32

Ensembl Gene ID:

ENSAPLG00000029671

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034556

48608165 - 48625336

17172

ENSAPLT00000034029

48608165 - 48625631

17467