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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48623718_48625186_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48623718 - 48625186
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCAATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGCTTTCAAT
Flanking Amino Acid:
FVGWFETSAKDNINIDEAAR
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.1
0.52
0.9
70.3
40
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
57.2
0.31
2
80.63
41.5

Associated Gene:

Gene:
RAB32
Ensembl Gene ID:
ENSAPLG00000029671
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034029
48608165 - 48625631
17467