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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48649176_48650784_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48649176 - 48650784
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
ATATTTTATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATGCATATTT
Flanking Amino Acid:
KEKSGKSPISHVFDDPEGKI
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.6
0.55
0.9
70.3
39.7
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
48
-0
2.2
73.68
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028353
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025540
48648975 - 48655749
6775