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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48650878_48654821_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48650878 - 48654821
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTAACTAATT
Flanking Amino Acid:
KRPQEFLINKIPVVVKNENS
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.5
0.6
0.8
69.7
36.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
55.1
0.24
2.1
83.36
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028353
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025540
48648975 - 48655749
6775