About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48815298_48827828_F

Intron Information:

Intron Rank:
126382
Intron Class:
major
Intron Phase:
Intron Coordinates:
48815298 - 48827828
Intron Length:
12531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TATGTAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
75.7
0.58
1
71.5
42.8
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
48.8
-0
2.1
70.32
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018093
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026706
48778745 - 48827893
49149