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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48881491_48881771_F

Intron Information:

Intron Rank:
127185
Intron Class:
major
Intron Phase:
Intron Coordinates:
48881491 - 48881771
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTATTCAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTTATTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.5
0.57
1
75.6
38.4
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
55.2
0.14
1.7
67.19
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029080
48880484 - 48890682
10199