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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48935268_48939154_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48935268 - 48939154
Intron Length:
3887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGCTTATTA
Flanking Amino Acid:
ISDNPMDEGKLLIGFESGTV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.75
0.8
77.6
35.3
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
57.3
0.22
2
71.94
40.6

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693
ENSAPLT00000044674
48922296 - 48996988
74693