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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48939239_48949092_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48939239 - 48949092
Intron Length:
9854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTTCTTGTATA
Flanking Amino Acid:
KADYRYSHDEAIHSVAWHHE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
59.9
0.31
1.8
75.76
36

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693