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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48950664_48956204_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48950664 - 48956204
Intron Length:
5541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATGTCTGATTT
Flanking Amino Acid:
LKVEYKTTRAGEPFIILSGG
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79
0.65
0.9
70.5
44.2
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
49.3
0.03
1.8
69.34
42

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693