Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48959961_48961015_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48959961 - 48961015

Intron Length:

1055

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TAATATTTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAATTTTTAATA

Flanking Amino Acid:

TQSYPEIIITGHADGSIKFW

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

75.8

34.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

70.9

0.47

0.9

65.4

40.3

Minor 5ss

32.5

-2

3.1

35.2

41.4

Minor BPS

71.4

0.67

1.1

72.7

Associated Gene:

Gene:

STXBP5

Ensembl Gene ID:

ENSAPLG00000014903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034036

48922296 - 48996988

74693

ENSAPLT00000015563

48922182 - 48996988

74807

ENSAPLT00000047079

48922296 - 48996988

74693

ENSAPLT00000015560

48922296 - 48996739

74444

ENSAPLT00000045183

48922296 - 48996988

74693

ENSAPLT00000044674

48922296 - 48996988

74693