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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48965027_48965930_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48965027 - 48965930
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTTTGCTTACTT
Flanking Amino Acid:
DGLRDNVPCLKVKNSPLKQS
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
79.8
0.67
0.9
73
37
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
65.3
0.56
2
87.41
38.9

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693