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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48966703_48973716_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48966703 - 48973716
Intron Length:
7014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACTATACAT
Flanking Amino Acid:
SPRKTRQPSGAGLCDINEGT
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.1
30.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85
0.79
0.9
76.9
42.1
Minor 5ss
36
-1.6
2.9
40.8
45.4
Minor BPS
45.9
-0.2
2
66.63
43.9

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693