Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48973783_48976346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48973783 - 48976346

Intron Length:

2564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCATC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCACTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TCTGTCTTCACT

Flanking Amino Acid:

PEDRCKSPTSGSGSPNSDDD

Intron Amino Acid Position:

639

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

78.1

36.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

74.9

0.56

0.8

69.5

30.1

Minor 5ss

-0.7

2.9

60.8

43.8

Minor BPS

61.1

0.43

1.9

78.66

44.1

Associated Gene:

Gene:

STXBP5

Ensembl Gene ID:

ENSAPLG00000014903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047079

48922296 - 48996988

74693

ENSAPLT00000044674

48922296 - 48996988

74693

ENSAPLT00000015563

48922182 - 48996988

74807