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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48976539_48983491_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48976539 - 48983491
Intron Length:
6953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
KFSRMVANDIAKMSRKLSLP
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.8
0.76
0.8
80.6
31
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000015560
48922296 - 48996739
74444