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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48989785_48992440_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48989785 - 48992440
Intron Length:
2656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
FCANGHIMTFSLPSLRPLLD
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.8
0.58
1
80
31.6
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044674
48922296 - 48996988
74693
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693