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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48996064_48996697_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48996064 - 48996697
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAT
Flanking Amino Acid:
ADSFSKHAHEMMLKYKDKKW
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.8
0.7
84.6
30.3
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
65
0.55
1.4
78.52
37.3

Associated Gene:

Gene:
STXBP5
Ensembl Gene ID:
ENSAPLG00000014903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034036
48922296 - 48996988
74693
ENSAPLT00000015563
48922182 - 48996988
74807
ENSAPLT00000047079
48922296 - 48996988
74693
ENSAPLT00000015560
48922296 - 48996739
74444
ENSAPLT00000045183
48922296 - 48996988
74693
ENSAPLT00000044674
48922296 - 48996988
74693