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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4902897_4954398_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4902897 - 4954398
Intron Length:
51502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TAAACATTTACG
Flanking Amino Acid:
GICPKQEHIAGKDEPSSYTC
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
47.8
-0.3
2
55.92
44.5

Associated Gene:

Gene:
BCL11A
Ensembl Gene ID:
ENSAPLG00000029796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034854
4899574 - 4956404
56831