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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49032685_49033433_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
49032685 - 49033433
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTTGGGTG
5'SS Class:
major
3'SS Sequence:
AAACTTCCAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
TGGAAAAAAACT
Flanking Amino Acid:
GVLAGSLAPVRHQVR*
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.2
52.9
43.9
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
50.7
0.02
1.1
50.5
37.3
Minor 5ss
35.8
-1.6
3.5
48.2
47.6
Minor BPS
39
-0.7
2.1
57.1
44.4

Associated Gene:

Gene:
SAMD5
Ensembl Gene ID:
ENSAPLG00000016694
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041553
49032227 - 49033449
1223