Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49250757_49276628_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49250757 - 49276628

Intron Length:

25872

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

GTAGTTTTAACT

Flanking Amino Acid:

MLWGKWNLSLDGL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

81.3

32.8

Major BPS

89.7

0.98

0.7

89.9

Major PPT

93.1

0.97

0.5

93.2

15.7

Minor 5ss

32.7

-2

3.4

40.8

45.4

Minor BPS

66.6

0.6

1.4

76.8

39.9

Associated Gene:

Gene:

SASH1

Ensembl Gene ID:

ENSAPLG00000007750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028969

49250747 - 49571131

320385