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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49387483_49474898_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49387483 - 49474898
Intron Length:
87416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCACCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
CTTGTCTCCACC
Flanking Amino Acid:
RETEFWNKVMDGSLGNIDDL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
65.2
0.34
0.8
59.3
31.3
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
47.2
-0.2
2.1
61.43
44.4

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047436
49387438 - 49572040
184603