About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49475028_49510995_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49475028 - 49510995
Intron Length:
35968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAACC
Flanking Amino Acid:
KRRVSQDLDVEKPDASPTSL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
79.1
0.89
1.5
86.52
29.9

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000048049
49453652 - 49572299
118648