Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49475028_49522592_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49475028 - 49522592

Intron Length:

47565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

TCTGCATCAATA

Flanking Amino Acid:

ASGGFHKTLMWLSIHKSSSE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

72.4

38.6

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

80.8

0.69

0.9

73.5

41.9

Minor 5ss

41.3

-1

2.5

48.1

42.7

Minor BPS

49.9

-0

1.9

64.52

42.2

Associated Gene:

Gene:

SASH1

Ensembl Gene ID:

ENSAPLG00000007750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033552

49276535 - 49571131

294597