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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49511047_49511167_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49511047 - 49511167
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTGCTCTCACT
Flanking Amino Acid:
TSLQLRSQIEESLGLSSTAS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
48.3
-0
2.2
71.75
45.6

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000048049
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696
ENSAPLT00000028969
49250747 - 49571131
320385