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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_49524260_49525552_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49524260 - 49525552
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
ATCTTTACCACG
Flanking Amino Acid:
QKGLMRQTSKGEDVGYVASE
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
86.6
0.82
0.7
81.5
30.6
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
39.7
-0.9
2
45.91
41.1

Associated Gene:

Gene:
SASH1
Ensembl Gene ID:
ENSAPLG00000007750
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028969
49250747 - 49571131
320385
ENSAPLT00000048049
49453652 - 49572299
118648
ENSAPLT00000008063
49453652 - 49572299
118648
ENSAPLT00000047436
49387438 - 49572040
184603
ENSAPLT00000044597
49432604 - 49572299
139696
ENSAPLT00000033552
49276535 - 49571131
294597